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Sample GSM1894818 Query DataSets for GSM1894818
Status Public on Aug 09, 2018
Title Definite Viral_09
Sample type RNA
 
Source name Whole Blood from patient with Definite Viral infection
Organism Homo sapiens
Characteristics category: Definite Viral
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
DefiniteViral_09_Detection_Pval

Data table
ID_REF VALUE DefiniteViral_09_Detection_Pval
ILMN_1762337 5.63687627378361 0.89592
ILMN_2055271 5.84918752782122 0.51779
ILMN_1736007 6.01164660866619 0.15283
ILMN_2383229 5.70676415923462 0.80632
ILMN_1806310 5.87757040514563 0.44532
ILMN_1779670 5.86736907445964 0.46772
ILMN_2321282 6.10364084865963 0.0527
ILMN_1671474 5.91456327825208 0.35441
ILMN_1772582 5.79208791318881 0.64954
ILMN_1735698 5.94249908449352 0.2859
ILMN_1653355 6.13224640413668 0.02767
ILMN_1717783 5.64991982816142 0.88142
ILMN_1705025 6.01342765837281 0.14888
ILMN_1814316 5.61368691546277 0.92754
ILMN_2359168 6.07067218201084 0.08827
ILMN_1731507 5.82518925944762 0.57708
ILMN_1787689 6.0442350998019 0.10408
ILMN_1745607 5.26969132798258 1
ILMN_2136495 5.74890724026214 0.73781
ILMN_1668111 5.89509332051859 0.39394

Total number of rows: 48803

Table truncated, full table size 1781 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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