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Sample GSM1894786 Query DataSets for GSM1894786
Status Public on Aug 09, 2018
Title Control_16
Sample type RNA
 
Source name Whole Blood from healthy control patient
Organism Homo sapiens
Characteristics category: Control
dataset: Validation
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Control_16_Detection_Pval

Data table
ID_REF VALUE Control_16_Detection_Pval
ILMN_1762337 5.87555848252596 0.46772
ILMN_2055271 6.16144960074655 0.02372
ILMN_1736007 5.8690172046606 0.49144
ILMN_2383229 6.08733103496034 0.08696
ILMN_1806310 5.62963007976552 0.9473
ILMN_1779670 5.9236001356309 0.38208
ILMN_2321282 5.91733865744005 0.39657
ILMN_1671474 5.82269271511272 0.61397
ILMN_1772582 5.8722901776841 0.47563
ILMN_1735698 5.78218326180135 0.69829
ILMN_1653355 6.33223500875705 0.00395000000000001
ILMN_1717783 5.8657396031245 0.49275
ILMN_1705025 5.95689709156471 0.31621
ILMN_1814316 5.61099902748788 0.95257
ILMN_2359168 5.80253563638642 0.65349
ILMN_1731507 5.8657396031245 0.49407
ILMN_1787689 5.9236001356309 0.38208
ILMN_1745607 5.93594626422473 0.35968
ILMN_2136495 5.75817882608832 0.75362
ILMN_1668111 5.50635590916913 0.99473

Total number of rows: 48803

Table truncated, full table size 1805 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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