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Sample GSM1894783 Query DataSets for GSM1894783
Status Public on Aug 09, 2018
Title Control_13
Sample type RNA
 
Source name Whole Blood from healthy control patient
Organism Homo sapiens
Characteristics category: Control
dataset: Validation
gender: Female
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Control_13_Detection_Pval

Data table
ID_REF VALUE Control_13_Detection_Pval
ILMN_1762337 5.87360123109535 0.41238
ILMN_2055271 6.10313784250625 0.0527
ILMN_1736007 5.99576050805985 0.17918
ILMN_2383229 5.76097645105267 0.68511
ILMN_1806310 5.82589621050666 0.51647
ILMN_1779670 5.82316697324507 0.52306
ILMN_2321282 6.15040940153421 0.01581
ILMN_1671474 6.01999521706474 0.13834
ILMN_1772582 5.67890509416883 0.83794
ILMN_1735698 5.94451636444385 0.27404
ILMN_1653355 5.96681860073687 0.2253
ILMN_1717783 5.8313295408954 0.49144
ILMN_1705025 5.87102092403118 0.41238
ILMN_1814316 5.75805086354143 0.69433
ILMN_2359168 6.09452286273684 0.05797
ILMN_1731507 5.7492219563519 0.71146
ILMN_1787689 5.98163970110782 0.19763
ILMN_1745607 5.84209598971036 0.47167
ILMN_2136495 5.95805129001322 0.24638
ILMN_1668111 5.54174819890377 0.96179

Total number of rows: 48803

Table truncated, full table size 1759 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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