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Sample GSM1894773 Query DataSets for GSM1894773
Status Public on Aug 09, 2018
Title Control_03
Sample type RNA
 
Source name Whole Blood from healthy control patient
Organism Homo sapiens
Characteristics category: Control
dataset: Validation
gender: Male
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Data processing The data were normalised using RSN, after background subtraction. The software used for data normalization was 'R' Language and Environment for Statistical Computing (R) 3.2.2
 
Submission date Sep 25, 2015
Last update date Aug 09, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE73462 Diagnosis of Kawasaki Disease in children using host RNA expression [Validation_HT12V3_Dataset]
GSE73464 Diagnosis of Kawasaki Disease in children using host RNA expression

Data table header descriptions
ID_REF
VALUE Illumina calculated signal intensity
Control_03_Detection_Pval

Data table
ID_REF VALUE Control_03_Detection_Pval
ILMN_1762337 5.89885600314184 0.37286
ILMN_2055271 6.0920484162831 0.0803700000000001
ILMN_1736007 6.0353729830334 0.14493
ILMN_2383229 5.76037262963284 0.71014
ILMN_1806310 5.93673211448487 0.30962
ILMN_1779670 5.93673211448487 0.31225
ILMN_2321282 6.14415091779096 0.01581
ILMN_1671474 6.04992088811367 0.13439
ILMN_1772582 5.69582167221349 0.82082
ILMN_1735698 5.89175060626044 0.38603
ILMN_1653355 6.14007191659116 0.01713
ILMN_1717783 5.57547374993343 0.94071
ILMN_1705025 5.69168833908634 0.82213
ILMN_1814316 5.48807663740608 0.98287
ILMN_2359168 5.84075702175246 0.52833
ILMN_1731507 5.46905326861847 0.98419
ILMN_1787689 6.05376880606982 0.13043
ILMN_1745607 5.69168833908634 0.82213
ILMN_2136495 5.85553418996849 0.4809
ILMN_1668111 5.67921699902242 0.84058

Total number of rows: 48803

Table truncated, full table size 1806 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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