GEO help: Mouse over screen elements for information.
Status
Public on Dec 11, 2007
Title
Test Sample CS-87_15ng
Sample type
RNA
Source name
invasive squamous cell carcinoma of the cervix
Organism
Homo sapiens Characteristics
Test Sample
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from 1000-5000 laser capture microdissected cells using the Arcturus PicoPure RNA isolation Kit (KIT0202).
Label
biotin
Label protocol
20-100 ng of total RNA was processed to produce biotinylated cRNA targets, using two rounds of T7-base RNA amplification with the Arcturus RiboAmp kit (KIT0201).
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Test Sample CS-87_15ng
Data processing
Ann Arbor quantile-normalized trimmed-mean method
Submission date
May 15, 2007
Last update date
Dec 11, 2007
Contact name
Rork Kuick
E-mail(s)
[email protected] Phone
734-936-9241
Organization name
University of Michigan
Street address
University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City
Ann Arbor
State/province
MI
ZIP/Postal code
48109-2029
Country
USA
Platform ID
GPL96 Series (1)
GSE7803 Human pre-invasive and invasive cervical squamous cell carcinomas and normal cervical epithelia
Data table header descriptions ID_REF VALUE quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 2 logarithms
Data table ID_REF VALUE 206858_s_at
11.51422091
204416_x_at
9.616548844
206632_s_at
13.22339841
212949_at
9.824958741
207039_at
12.64745843
213008_at
10.7903485
202620_s_at
12.38073161
204947_at
9.891783703
219787_s_at
11.85135865
210093_s_at
10.68825031
204126_s_at
9.686500527
201663_s_at
10.7968508
218959_at
10.21067134
202338_at
11.98013958
218009_s_at
11.7874945
202580_x_at
11.42940674
206316_s_at
10.92035286
209935_at
9.495855027
212058_at
12.24703742
209900_s_at
9.640244936
22283 495 Kbytes .Supplementary file Size Download File type/resource GSM189383.CEL.gz
3.3 Mb
(ftp) (http) CEL
Processed data included within Sample table
