|
| Status |
Public on Sep 15, 2015 |
| Title |
CD8_TE_Zeb2-KO_lumi.2 |
| Sample type |
RNA |
| |
|
| Source name |
CD8_TE_Zeb2-KO_lumi
|
| Organism |
Mus musculus |
| Characteristics |
strain background: C57BL/6
genotype/variation: Zeb2-KO; GzmB-Cre Zeb2-fl/fl
age: P14
time point: 8 d.p.i. with LCMV
cell type: cytotoxic T lymphocyte (CTL)
cell subtype: TE (KLRGhi IL7Rlo)
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Rneasy with on column digestion
|
| Label |
biotin
|
| Label protocol |
standard Illumina protocol
|
| |
|
| Hybridization protocol |
standard Illumina protocol
|
| Scan protocol |
standard Illumina protocol
|
| Description |
Illumina Microarray of TE (KLRGhi IL7Rlo)Zeb2-KO P14 CTLs isolated 8 d.p.i. with LCMV replicate 2
6096357004_B
|
| Data processing |
Utilized R::beadarray package with the readIdatFiles and normaliseIllumina functions to extract raw and normalised (neqc, log2 transformed) values.
|
| |
|
| Submission date |
Aug 26, 2015 |
| Last update date |
Sep 15, 2015 |
| Contact name |
Susan M Kaech |
| E-mail(s) |
[email protected]
|
| Phone |
8582453350
|
| Organization name |
Yale University
|
| Department |
Immunobiology
|
| Street address |
300 Cedar St, TAC S640
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06511 |
| Country |
USA |
| |
|
| Platform ID |
GPL17543 |
| Series (1) |
| GSE72408 |
The transcription factors ZEB2 and T-bet cooperate to program cytotoxic T cell terminal differentiation |
|
| Relations |
| BioSample |
SAMN03785106 |
