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| Status |
Public on Oct 01, 2007 |
| Title |
RCC_G1_no-meta |
| Sample type |
RNA |
| |
|
| Source name |
Renal cell carcinoma, small nuclei, with no metastasis
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| Organism |
Rattus norvegicus |
| Characteristics |
F1 from Fischer344 and Brown-Norway, male, Fe-NTA induced renal cell carcinoma, small nuclei, with no metasiasis
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using Isogen (Nippon Gene Co. Ltd., Tokyo).
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
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| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
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| Description |
Original sample number: FB48-5
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| Data processing |
Affymetrix GCOS 1.0, scaled to 100
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| |
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| Submission date |
Apr 26, 2007 |
| Last update date |
Apr 30, 2007 |
| Contact name |
Shinya Toyokuni |
| E-mail(s) |
[email protected]
|
| Organization name |
Nagoya University
|
| Department |
Pathology
|
| Street address |
65 Tsuruma-Cho, Showa-Ku
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| City |
Nagoya |
| State/province |
Aichi |
| ZIP/Postal code |
466-8550 |
| Country |
Japan |
| |
|
| Platform ID |
GPL1355 |
| Series (1) |
| GSE7625 |
Transcriptome analysis of an oxidative stress-induced rat renal carcinogenesis model |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
GCOS-calculated Signal intensity, scaled to 100 |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
0.652545 |
A |
0.686277 |
| AFFX-BioB-M_at |
0.739175 |
A |
0.910522 |
| AFFX-BioB-3_at |
2.41432 |
A |
0.631562 |
| AFFX-BioC-5_at |
294.754 |
P |
5.16732e-05 |
| AFFX-BioC-3_at |
269.248 |
P |
4.42873e-05 |
| AFFX-BioDn-5_at |
574.906 |
P |
5.16732e-05 |
| AFFX-BioDn-3_at |
1135.16 |
P |
5.16732e-05 |
| AFFX-CreX-5_at |
3964.67 |
P |
4.42873e-05 |
| AFFX-CreX-3_at |
3700.87 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
2.39401 |
A |
0.60308 |
| AFFX-DapX-M_at |
5.71018 |
P |
0.0396478 |
| AFFX-DapX-3_at |
2.79494 |
A |
0.814869 |
| AFFX-LysX-5_at |
4.59925 |
A |
0.180167 |
| AFFX-LysX-M_at |
0.866497 |
A |
0.699394 |
| AFFX-LysX-3_at |
3.53982 |
A |
0.216524 |
| AFFX-PheX-5_at |
0.410624 |
A |
0.724924 |
| AFFX-PheX-M_at |
0.22681 |
A |
0.987453 |
| AFFX-PheX-3_at |
5.50811 |
A |
0.340661 |
| AFFX-ThrX-5_at |
0.574436 |
A |
0.941556 |
| AFFX-ThrX-M_at |
0.548013 |
A |
0.772383 |
Total number of rows: 31099
Table truncated, full table size 956 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM184448.CEL.gz |
4.2 Mb |
(ftp)(http) |
CEL |
| GSM184448.CHP.gz |
167.8 Kb |
(ftp)(http) |
CHP |
| Processed data provided as supplementary file |
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