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Sample GSM17375 Query DataSets for GSM17375
Status Public on Jan 10, 2005
Title DFCR6
Sample type RNA
 
Source name Liver of female Ames dwarf mouse (df/df) fed 30% less of the standard pelleted diet with respect to the amount consumed by female ad libitum fed df/df mice
Organism Mus musculus
Extracted molecule total RNA
 
Description Female Ames dwarf mouse (df/df) with ad libitum access to water and fed 30% less of the standard pelleted diet with respect to the amount consumed by female ad libitum fed df/df mice (LabDiet, PMI Feeds, Inc., St Louis, MO) caged with microisolator filter tops. Mice were killed between 24 to 26 months of age, tissues removed, rapidly frozen on dry ice, and stored in liquid nitrogen. Total liver RNA was isolated from frozen tissue as described (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted). mRNA levels were measured using the Affymetrix mouse U74Av2 array according to standard protocols. After hybridization, arrays were scanned using a Hewlett-Packard GeneArray Scanner. Image analysis was performed as described (Cao SX, Dhahbi JM, Mote PL, and Spindler SR. Genomic profiling of short- and long-term caloric restriction effects in the liver of aging mice. Proc Natl Acad Sci U S A 98: 10630-10635, 2001). A more detailed description of the methods can be found in (T. Tsuchiya, J.M. Dhahbi, X. Cui, P.L. Mote, A. Bartke, S.R. Spindler, Physiological Genomics, Submitted).
Keywords = Ames dwarf
Keywords = mouse
Keywords = Affymetrix
Keywords = caloric restriction
 
Submission date Mar 01, 2004
Last update date May 28, 2005
Contact name Stephen R. Spindler
E-mail(s) [email protected]
Phone 909-787-3597
Fax 909-787-4434
URL http://www.biochemistry.ucr.edu/faculty/spindler.html
Organization name University of California, Riverside
Department Biochemistry
Street address
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platform ID GPL81
Series (2)
GSE1087 Dwarf Calorie Restricted
GSE1093 caloric restriction

Data table header descriptions
ID_REF
Stat Pairs Number of probe pairs for each transcription unit
Stat Pairs Used Number of probe pairs used in the analysis
VALUE MAS 5.0 Calculated intensity of the signal measured by each probe set
ABS_CALL Absent (A), Present (P), or Marginal (M) as judged by the detection P value
Detection p-value Detection P value calculated by MAS 5.0

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 38.4 A 0.60308
AFFX-MurIL10_at 20 20 16.5 A 0.574038
AFFX-MurIL4_at 20 20 5.8 A 0.631562
AFFX-MurFAS_at 20 20 304.3 P 0.000754
AFFX-BioB-5_at 20 20 268.8 P 0.01667
AFFX-BioB-M_at 20 20 447.7 P 0.00141
AFFX-BioB-3_at 20 20 248.4 P 0.003212
AFFX-BioC-5_at 20 20 702.7 P 0.000195
AFFX-BioC-3_at 20 20 454.3 P 0.000081
AFFX-BioDn-5_at 20 20 898.2 P 0.000147
AFFX-BioDn-3_at 20 20 4205.2 P 0.000297
AFFX-CreX-5_at 20 20 7407.9 P 0.000052
AFFX-CreX-3_at 20 20 11573.9 P 0.000044
AFFX-BioB-5_st 20 20 44.4 A 0.382599
AFFX-BioB-M_st 20 20 62.7 A 0.724854
AFFX-BioB-3_st 20 20 28 A 0.712257
AFFX-BioC-5_st 20 20 22.2 A 0.749204
AFFX-BioC-3_st 20 20 6.2 A 0.737173
AFFX-BioDn-5_st 20 20 151.4 A 0.195266
AFFX-BioDn-3_st 20 20 181.6 A 0.102165

Total number of rows: 12488

Table truncated, full table size 393 Kbytes.




Supplementary data files not provided

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