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Sample GSM17054 Query DataSets for GSM17054
Status Public on Apr 01, 2004
Title TK6 NO 24h:TK6 U, rep 5
Sample type RNA
 
Channel 1
Source name TK6 NO 24h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name TK6 U
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 34149
TK6 cells treated with 390 micromol nitric oxide and harvested 24 hours after the end of treatment versus untreated TK6 cells.
Array Print: Hs-UniGEM2-v2.6p3-070202
cell_type: lymphoblastoid
cell_line: TK6
p53 allele: wild-type
treatment_agent: nitric oxide
treatment_dose: 390 micromol
treatment_time: 24 hours
 
Submission date Feb 18, 2004
Last update date May 28, 2005
Contact name Ana I Robles
E-mail(s) [email protected]
Phone 301-496-1729
Organization name National Cancer Institute/NIH
Lab Laboratory of Human Carcinogenesis
Street address 37 Convent Dr 37/3060D
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL257
Series (1)
GSE1064 TK6 and WTK1 LCLs plus NO

Data table header descriptions
ID_REF NCI mAdb well id
VALUE log ratio (log2 of PRE_VALUE)
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE
159762 -0.5691803 1 1 1 1297 356 792 234 1578 221 761 181 0 0.674
159763 0.1256513 2 1 1 1735 659 750 240 1755 804 770 153 0 1.091
159764 0.4885153 3 1 1 2778 768 759 225 2363 771 793 120 0 1.403
159765 0.8139353 4 1 1 5317 1690 793 229 3529 889 723 127 0 1.758
159766 -0.1202943 1 2 1 1917 566 792 236 2109 428 776 184 0 0.920
159767 -0.1344773 2 2 1 1700 568 766 238 1892 456 774 150 0 0.911
159768 -0.1124753 3 2 1 1747 572 769 226 1934 455 781 117 0 0.925
159769 0.2916043 4 2 1 4010 1186 799 232 3587 898 726 123 0 1.224
159770 -0.3129393 1 3 1 1764 720 844 282 2036 370 790 206 0 0.805
159771 -0.0247373 2 3 1 2138 841 754 219 2307 707 771 118 0 0.983
159772 -0.8084373 3 3 1 1472 520 850 281 2001 374 814 169 0 0.571
159773 -0.3492353 4 3 1 1575 374 813 238 1816 439 757 134 0 0.785
159774 0.0384363 1 4 1 7937 2788 792 234 8383 3037 796 139 0 1.027
159775 0.2166103 2 4 1 1933 750 762 220 1861 819 762 127 0 1.162
159776 0.3928673 3 4 1 1911 578 760 217 1724 391 768 122 0 1.313
159777 -0.6259343 4 4 1 1593 320 882 259 1962 293 765 156 0 0.648
159778 -0.0528953 1 5 1 1995 655 777 232 2163 437 785 125 0 0.964
159779 -0.2740413 2 5 1 1562 411 766 213 1812 344 762 133 0 0.827
159780 0.0551963 3 5 1 1234 274 752 219 1298 355 792 124 0 1.039
159781 -0.6326293 4 5 1 1309 319 874 249 1486 351 751 129 0 0.645

Total number of rows: 9128

Table truncated, full table size 605 Kbytes.




Supplementary data files not provided
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