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Status
Public on Jan 01, 2005
Title
lec1 Mid-Maturation Seed 1 (AtGenome1)
Sample type
RNA
Source name
Genotype: Ws-0, lec1; Stage: Mid-Maturation Seed; Technical Replica: 1 of 2
Organism
Arabidopsis thaliana Extracted molecule
total RNA
Description
Microarray Methods: Total RNA was extracted using the Hot Borate Method (ref.). Fifteen micrograms of biotinylated complementary RNA (cRNA) was prepared as described (Le et. al., 2004, PNAS). cRNA was subsequently hybridized to Affymetrix ATH1 Arabidopsis GeneChips. The scanned array images were analyzed using Affymetrix Microarray Suite 4.0 (MAS 4.0) with a global scaling intensity set at 2500.
Submission date
Feb 17, 2004
Last update date
May 28, 2005
Contact name
Bob Goldberg
E-mail(s)
[email protected] Phone
310-825-3270
Organization name
University of California, Los Angeles
Department
Molecular, Cell and Developmental Biology
Street address
610 Charles E Young Drive East
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Platform ID
GPL71 Series (1)
GSE1051 Seed development in LEAFY COTYLEDON1 mutants
Data table header descriptions ID_REF
VALUE AVG_DIFF - This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected (Present ; P), not detected (Absent; A), or marginally detected (Marginal; M)
Data table ID_REF VALUE ABS_CALL AFFX-MurIL2_at
-404.1
A
AFFX-MurIL10_at
-148.8
A
AFFX-MurIL4_at
57.5
A
AFFX-MurFAS_at
117.5
A
AFFX-BioB-5_at
6942.4
P
AFFX-BioB-M_at
9122.2
P
AFFX-BioB-3_at
9200.1
P
AFFX-BioC-5_at
17047.5
P
AFFX-BioC-3_at
19184.5
P
AFFX-BioDn-5_at
23284.3
P
AFFX-BioDn-3_at
57724.9
P
AFFX-CreX-5_at
128786.7
P
AFFX-CreX-3_at
159085.3
P
AFFX-BioB-5_st
176.4
A
AFFX-BioB-M_st
270
A
AFFX-BioB-3_st
-291.1
A
AFFX-BioC-5_st
39.4
A
AFFX-BioC-3_st
-206.6
A
AFFX-BioDn-5_st
600.4
A
AFFX-BioDn-3_st
612.6
A
8297 143 Kbytes .Supplementary file Size Download File type/resource GSM17002.CEL.gz
1.7 Mb
(ftp) (http) CEL
