|
| Status |
Public on May 07, 2015 |
| Title |
GM12878 RNA-seq Replicate 3 |
| Sample type |
SRA |
| |
|
| Source name |
Lymphoblastoid cell line GM12878
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: GM12878
cell type: Lymphoblastoid cell line
|
| Biomaterial provider |
Coriell Cell repositories (GM12878); http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
|
| Growth protocol |
Cells grown under standard conditions in RPMI 1640 supplemented with 15% FBS.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNeasy Kit
Standard Illumina TruSeq protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
GM12878rep3
|
| Data processing |
Reads generated with standard Illumina pipeline
Reads mapped with Bowtie2
Differential expression determined with CuffDiff2
Genome_build: hg19
Supplementary_files_format_and_content: standard outputs from CuffDiff2 and GFF for gene models used including the differential expression test output from CuffDiff (gene_exp.diff).
|
| |
|
| Submission date |
Apr 21, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Darren A. Cusanovich |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Arizona
|
| Department |
Cellular and Molecular Medicine
|
| Street address |
1230 N Cherry Avenue, BSRL 421
|
| City |
Tucson |
| State/province |
AZ |
| ZIP/Postal code |
85721 |
| Country |
USA |
| |
|
| Platform ID |
GPL18573 |
| Series (2) |
| GSE68102 |
Multiplex Single Cell Profiling of Chromatin Accessibility by Combinatorial Cellular Indexing [RNA-seq] |
| GSE68103 |
Multiplex Single Cell Profiling of Chromatin Accessibility by Combinatorial Cellular Indexing |
|
| Relations |
| BioSample |
SAMN03495979 |
| SRA |
SRX1002663 |
