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Sample GSM1663003 Query DataSets for GSM1663003
Status Public on May 07, 2015
Title GM12878 RNA-seq Replicate 2
Sample type SRA
 
Source name Lymphoblastoid cell line GM12878
Organism Homo sapiens
Characteristics cell line: GM12878
cell type: Lymphoblastoid cell line
Biomaterial provider Coriell Cell repositories (GM12878); http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Growth protocol Cells grown under standard conditions in RPMI 1640 supplemented with 15% FBS.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Kit
Standard Illumina TruSeq protocol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description GM12878rep2
Data processing Reads generated with standard Illumina pipeline
Reads mapped with Bowtie2
Differential expression determined with CuffDiff2
Genome_build: hg19
Supplementary_files_format_and_content: standard outputs from CuffDiff2 and GFF for gene models used including the differential expression test output from CuffDiff (gene_exp.diff).
 
Submission date Apr 21, 2015
Last update date May 15, 2019
Contact name Darren A. Cusanovich
E-mail(s) [email protected]
Organization name University of Arizona
Department Cellular and Molecular Medicine
Street address 1230 N Cherry Avenue, BSRL 421
City Tucson
State/province AZ
ZIP/Postal code 85721
Country USA
 
Platform ID GPL18573
Series (2)
GSE68102 Multiplex Single Cell Profiling of Chromatin Accessibility by Combinatorial Cellular Indexing [RNA-seq]
GSE68103 Multiplex Single Cell Profiling of Chromatin Accessibility by Combinatorial Cellular Indexing
Relations
BioSample SAMN03495978
SRA SRX1002662

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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