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Sample GSM157329 Query DataSets for GSM157329
Status Public on Jan 22, 2007
Title Coates_1-1_Col-0_Rep1_ATH1
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics developmental stage: between 1.0 and 1.02 (7 days)
tissue: roots
Extracted molecule total RNA
Extraction protocol standard NASC extraction protocol
Label biotin
Label protocol standard NASC labeling protocol
 
Hybridization protocol standard NASC hybridization protocol
Scan protocol standard NASC scanning protocol
Description location: Growth Room
Temperature: 24oC
Lighting: 16h day/8h night
Medium: 0.5 x Murashige and Skoog 1% agar
Stratification: sterilise seed 15 min parozone rinse 3x distilled water 2 days at 4oC before germination
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Jan 22, 2007
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 3.29573950195313E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 4.93445263671875E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 6.26578674316406E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 9.79283325195313E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 2.68640655517578E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 2.77530609130859E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 8.51673736572266E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 8.17301559448242E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 6.94398040771484E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 1.57202541828156E+000 A 9.69726979732513E-001
AFFX-r2-Bs-thr-5_s_at 1.57639045715332E+001 A 1.71387001872063E-001
AFFX-r2-Bs-thr-3_s_at 2.30694866180420E+000 A 9.04784977436066E-001
AFFX-r2-Bs-phe-M_at 9.02468979358673E-001 A 8.05419981479645E-001
AFFX-r2-Bs-phe-5_at 7.23822498321533E+000 A 3.58154296875000E-001
AFFX-r2-Bs-phe-3_at 2.37893199920654E+000 A 9.43848013877869E-001
AFFX-r2-Bs-lys-M_at 1.23057937622070E+001 A 1.49657994508743E-001
AFFX-r2-Bs-lys-5_at 1.23098194599152E+000 A 6.01073980331421E-001
AFFX-r2-Bs-lys-3_at 1.44582519531250E+001 P 3.58886718750000E-002
AFFX-r2-Bs-dap-M_at 3.20970058441162E+000 A 9.32372987270355E-001
AFFX-r2-Bs-dap-5_at 9.21979010105133E-001 A 9.76073980331421E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM157329.CEL.gz 1.8 Mb (ftp)(http) CEL

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