NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM15709 Query DataSets for GSM15709
Status Public on Jan 27, 2004
Title CurrentSmoker 102
Sample type RNA
 
Source name Bronchial Epithelia
Organism Homo sapiens
Characteristics tissue: Bronchial Epithelium
Extracted molecule total RNA
Extraction protocol RNA was extracted by using TRIzol Reagent (Invitrogen) according to the manufacturer's protocol
Label protocol Affymetrix Suggested Protocol
 
Hybridization protocol Affymetrix Suggested Protocol
Scan protocol Affymetrix Suggested Protocol
Description Volunteer patients underwent bronchoscopy from which RNA was extracted using a commercial RNA extraction kit. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo Sapiens, bronchial epithelia, molecular screen for smoking related changes to transcript levels in bronchial epithelia
Data processing MAS5.0 Scaled 100 generated expression value
 
Submission date Jan 24, 2004
Last update date Aug 18, 2014
Contact name Avrum Spira
E-mail(s) [email protected]
Phone 617-638-4860
Fax 617-536-8093
URL http://www.pulmonomics.com
Organization name Boston University Medical Center
Department Pulmonary and Critical Care Medicine
Lab Pulmonomics Lab
Street address 715 Albany Street, R304
City Boston
State/province MA
ZIP/Postal code 02118
Country USA
 
Platform ID GPL96
Series (1)
GSE994 Effects of cigarette smoke on the human airway epithelial cell transcriptome
Relations
Reanalyzed by GSE60486

Data table header descriptions
ID_REF Affymetrix Probeset ID
VALUE MAS5.0 Scaled 100 generated expression value
DETECTION P-VALUE P-Value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1235.300 0.000322
1053_at 37.900 0.302547
117_at 30.700 0.204022
121_at 385.900 0.006532
1255_g_at 13.100 0.302547
1294_at 173.000 0.001141
1316_at 55.700 0.013092
1320_at 11.300 0.715253
1405_i_at 207.400 0.000491
1431_at 3.800 0.234557
1438_at 38.700 0.378184
1487_at 166.500 0.024711
1494_f_at 154.800 0.003585
1598_g_at 351.600 0.009985
160020_at 207.800 0.024711
1729_at 267.000 0.000673
1773_at 20.800 0.418069
177_at 26.800 0.175989
179_at 368.000 0.027860
1861_at 85.700 0.031336

Total number of rows: 22215

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM15709.CEL.gz 3.3 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap