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Sample GSM155692 Query DataSets for GSM155692
Status Public on May 15, 2007
Title HNC2784
Sample type RNA
 
Source name Head and neck cancer
Organism Homo sapiens
Characteristics Case: Head and neck cancer
Anatomical sites: Hypopharynx
gender: Male
age: 53
Tumor Stage: No data
Treatment protocol Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
Growth protocol Sample was harvested without further growth
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
Scan protocol GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
Description Head and neck cancer
Data processing The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
 
Submission date Jan 17, 2007
Last update date Aug 28, 2018
Contact name Paul Ahlquist
E-mail(s) [email protected]
Organization name University of Wisconsin-Madison
Department Oncology
Street address 1525 Linden Dr.
City Madison
State/province WI
ZIP/Postal code 53706
Country USA
 
Platform ID GPL570
Series (1)
GSE6791 Gene Expression Profiles of HPV-Positive and -Negative Head/Neck and Cervical Cancers
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
1007_s_at 12.19698144
1053_at 7.218358195
117_at 7.640933933
121_at 10.22837757
1255_g_at 4.933801738
1294_at 9.363462746
1316_at 6.884794993
1320_at 6.463370724
1405_i_at 7.811913996
1431_at 5.735149662
1438_at 7.973590201
1487_at 8.773941533
1494_f_at 8.391457399
1552256_a_at 6.37902737
1552257_a_at 10.00953468
1552258_at 7.238610132
1552261_at 6.396249747
1552263_at 7.732234974
1552264_a_at 7.603792365
1552266_at 5.460270668

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM155692.CEL.gz 5.3 Mb (ftp)(http) CEL
GSM155692.EXP.gz 535 b (ftp)(http) EXP

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