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Sample GSM1539723 Query DataSets for GSM1539723
Status Public on Aug 05, 2015
Title 7348931005_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 83
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGADC021
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.12298949
ILMN_1806310 6.031722939
ILMN_1653355 6.059081962
ILMN_1705025 6.025216723
ILMN_1814316 6.048144432
ILMN_3241953 6.140996792
ILMN_1735045 6.09451528
ILMN_1680754 6.176178056
ILMN_1659452 6.043135958
ILMN_1767388 6.060731552
ILMN_1755321 6.079667435
ILMN_1698554 6.229977002
ILMN_1814092 6.204586836
ILMN_2061446 7.147207291
ILMN_1676336 6.394486956
ILMN_1752884 6.084879488
ILMN_1668851 6.002978763
ILMN_1726986 6.053538457
ILMN_3237396 6.530772529
ILMN_1688755 7.542641434

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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