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Sample GSM1539657 Query DataSets for GSM1539657
Status Public on Aug 05, 2015
Title 7943280031_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: British English
age: 85
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00477
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.089004578
ILMN_1806310 6.039573098
ILMN_1653355 6.026428434
ILMN_1705025 6.021808014
ILMN_1814316 6.070309927
ILMN_3241953 6.23727056
ILMN_1735045 6.005515194
ILMN_1680754 6.036934859
ILMN_1659452 6.146491305
ILMN_1767388 6.082398379
ILMN_1755321 6.095282407
ILMN_1698554 6.2320484
ILMN_1814092 6.123387158
ILMN_2061446 7.112093074
ILMN_1676336 6.251768936
ILMN_1752884 6.025877238
ILMN_1668851 6.005845531
ILMN_1726986 6.050205282
ILMN_3237396 6.567968942
ILMN_1688755 7.886627338

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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