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Sample GSM1539577 Query DataSets for GSM1539577
Status Public on Aug 05, 2015
Title 7964814051_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Any_Other_White_Background
age: 79
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00183
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.141256253
ILMN_1806310 6.04190643
ILMN_1653355 6.049717036
ILMN_1705025 6.012254989
ILMN_1814316 6.046830094
ILMN_3241953 6.246937919
ILMN_1735045 6.002700136
ILMN_1680754 6.213533135
ILMN_1659452 6.054702302
ILMN_1767388 6.024374983
ILMN_1755321 6.13217931
ILMN_1698554 6.19235748
ILMN_1814092 6.125048962
ILMN_2061446 6.81720952
ILMN_1676336 6.352449496
ILMN_1752884 6.036339261
ILMN_1668851 6.035852366
ILMN_1726986 6.019094089
ILMN_3237396 6.741419186
ILMN_1688755 7.641027902

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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