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Sample GSM1539574 Query DataSets for GSM1539574
Status Public on Aug 05, 2015
Title 7196843090_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 79
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGMCI021
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.3106199
ILMN_1806310 6.019289896
ILMN_1653355 5.993490244
ILMN_1705025 6.028950027
ILMN_1814316 6.062555546
ILMN_3241953 5.958099447
ILMN_1735045 6.002471348
ILMN_1680754 6.145531896
ILMN_1659452 6.046582809
ILMN_1767388 6.169975761
ILMN_1755321 6.189267771
ILMN_1698554 6.285246556
ILMN_1814092 6.425371644
ILMN_2061446 7.549637529
ILMN_1676336 6.263164496
ILMN_1752884 6.050488602
ILMN_1668851 6.04609669
ILMN_1726986 6.078861004
ILMN_3237396 6.46947008
ILMN_1688755 7.640748476

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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