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Sample GSM1539572 Query DataSets for GSM1539572
Status Public on Aug 05, 2015
Title 7196843090_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: British
age: 77
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00421
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.10377513
ILMN_1806310 6.027199854
ILMN_1653355 6.074102488
ILMN_1705025 6.052101853
ILMN_1814316 6.011020284
ILMN_3241953 6.237359386
ILMN_1735045 5.995487507
ILMN_1680754 6.023476485
ILMN_1659452 6.12228193
ILMN_1767388 6.045990264
ILMN_1755321 6.106791515
ILMN_1698554 6.191671869
ILMN_1814092 6.168093193
ILMN_2061446 7.03472109
ILMN_1676336 6.333953061
ILMN_1752884 6.023262858
ILMN_1668851 5.979042126
ILMN_1726986 6.021421349
ILMN_3237396 6.562791143
ILMN_1688755 7.882953596

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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