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Sample GSM1539569 Query DataSets for GSM1539569
Status Public on Aug 05, 2015
Title 7196843090_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOCTL048
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.127478235
ILMN_1806310 6.017785176
ILMN_1653355 6.05888653
ILMN_1705025 6.086204944
ILMN_1814316 6.041015963
ILMN_3241953 6.254605477
ILMN_1735045 5.98314811
ILMN_1680754 6.011085569
ILMN_1659452 6.146506708
ILMN_1767388 6.034541516
ILMN_1755321 6.199197054
ILMN_1698554 6.244242469
ILMN_1814092 6.053035199
ILMN_2061446 6.947201302
ILMN_1676336 6.5060939
ILMN_1752884 6.022367126
ILMN_1668851 6.03688672
ILMN_1726986 6.079536263
ILMN_3237396 6.788802304
ILMN_1688755 8.083440216

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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