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Sample GSM1539568 Query DataSets for GSM1539568
Status Public on Aug 05, 2015
Title 7196843052_K
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Asian
age: 79
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LNDMCI025
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.087410624
ILMN_1806310 6.0406222
ILMN_1653355 6.061967992
ILMN_1705025 6.006741316
ILMN_1814316 6.076348691
ILMN_3241953 6.224391694
ILMN_1735045 6.017781586
ILMN_1680754 6.087039203
ILMN_1659452 6.109223981
ILMN_1767388 6.068548993
ILMN_1755321 6.149742725
ILMN_1698554 6.11338946
ILMN_1814092 6.083202215
ILMN_2061446 6.908249873
ILMN_1676336 6.424081889
ILMN_1752884 6.021510129
ILMN_1668851 6.032297484
ILMN_1726986 6.062265928
ILMN_3237396 6.446724545
ILMN_1688755 7.444407693

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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