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Sample GSM1539566 Query DataSets for GSM1539566
Status Public on Aug 05, 2015
Title 7196843052_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 82
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGMCI027
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.106402977
ILMN_1806310 6.009676377
ILMN_1653355 6.014944278
ILMN_1705025 6.07326467
ILMN_1814316 6.051475526
ILMN_3241953 6.170017417
ILMN_1735045 6.015214221
ILMN_1680754 6.079069208
ILMN_1659452 6.125146979
ILMN_1767388 6.108598831
ILMN_1755321 6.056476996
ILMN_1698554 6.155191566
ILMN_1814092 6.133986079
ILMN_2061446 7.007405867
ILMN_1676336 6.321955115
ILMN_1752884 6.033329689
ILMN_1668851 6.039338825
ILMN_1726986 6.019105081
ILMN_3237396 6.634922437
ILMN_1688755 7.655635595

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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