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Sample GSM1539556 Query DataSets for GSM1539556
Status Public on Aug 05, 2015
Title 7196843081_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: British
age: 88
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00546
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.318488313
ILMN_1806310 6.034123204
ILMN_1653355 6.005693203
ILMN_1705025 6.054531826
ILMN_1814316 6.06295864
ILMN_3241953 6.076948334
ILMN_1735045 6.033185884
ILMN_1680754 6.153238281
ILMN_1659452 6.138135425
ILMN_1767388 6.115371001
ILMN_1755321 6.162076302
ILMN_1698554 6.301459913
ILMN_1814092 6.085869977
ILMN_2061446 7.305434477
ILMN_1676336 6.343940335
ILMN_1752884 6.013675951
ILMN_1668851 6.019908166
ILMN_1726986 6.076906376
ILMN_3237396 6.663971703
ILMN_1688755 7.332895339

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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