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Sample GSM1539551 Query DataSets for GSM1539551
Status Public on Aug 05, 2015
Title 7196843081_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: British_Other_Background
age: 85
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00441
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.390026725
ILMN_1806310 6.006521065
ILMN_1653355 6.040965282
ILMN_1705025 6.159826018
ILMN_1814316 6.042895024
ILMN_3241953 6.102343238
ILMN_1735045 6.001121939
ILMN_1680754 6.07393389
ILMN_1659452 6.017454133
ILMN_1767388 6.07989012
ILMN_1755321 6.068494143
ILMN_1698554 6.189072952
ILMN_1814092 6.300802531
ILMN_2061446 7.368295507
ILMN_1676336 6.064271511
ILMN_1752884 6.058286273
ILMN_1668851 6.013753995
ILMN_1726986 6.064032534
ILMN_3237396 6.651828929
ILMN_1688755 7.726830551

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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