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Sample GSM1539550 Query DataSets for GSM1539550
Status Public on Aug 05, 2015
Title 7196835071_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: British_English
age: 75
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00025
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.114670743
ILMN_1806310 6.040174643
ILMN_1653355 6.027984112
ILMN_1705025 6.038091355
ILMN_1814316 6.038778202
ILMN_3241953 6.114919918
ILMN_1735045 6.116716692
ILMN_1680754 6.205269981
ILMN_1659452 6.112457496
ILMN_1767388 6.116414128
ILMN_1755321 6.103520766
ILMN_1698554 6.105990337
ILMN_1814092 6.19133161
ILMN_2061446 6.929953136
ILMN_1676336 6.362804322
ILMN_1752884 6.037207063
ILMN_1668851 6.03809798
ILMN_1726986 6.034559652
ILMN_3237396 6.822424816
ILMN_1688755 8.000182041

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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