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Sample GSM1539547 Query DataSets for GSM1539547
Status Public on Aug 05, 2015
Title 7196843007_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: British_English
age: 74
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00097
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.141741803
ILMN_1806310 6.007827538
ILMN_1653355 6.053636657
ILMN_1705025 6.045063805
ILMN_1814316 6.051234502
ILMN_3241953 6.324226589
ILMN_1735045 6.003659573
ILMN_1680754 6.126504289
ILMN_1659452 6.018151944
ILMN_1767388 6.111346552
ILMN_1755321 6.117249946
ILMN_1698554 6.190016147
ILMN_1814092 6.203802916
ILMN_2061446 7.196135431
ILMN_1676336 6.419368626
ILMN_1752884 6.037704885
ILMN_1668851 6.022230374
ILMN_1726986 6.16487291
ILMN_3237396 6.439961251
ILMN_1688755 7.418909204

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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