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Sample GSM1539546 Query DataSets for GSM1539546
Status Public on Aug 05, 2015
Title 7348931005_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: British_English
age: 73
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00231
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.340051203
ILMN_1806310 6.023254147
ILMN_1653355 6.05133276
ILMN_1705025 6.066540092
ILMN_1814316 6.013900672
ILMN_3241953 6.171951635
ILMN_1735045 6.003962427
ILMN_1680754 6.062199184
ILMN_1659452 6.056193892
ILMN_1767388 6.067892924
ILMN_1755321 6.088467913
ILMN_1698554 6.297116537
ILMN_1814092 6.121906505
ILMN_2061446 7.007149914
ILMN_1676336 6.214268434
ILMN_1752884 6.02250409
ILMN_1668851 6.01925213
ILMN_1726986 6.04385355
ILMN_3237396 6.741522423
ILMN_1688755 7.854949584

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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