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Sample GSM1539542 Query DataSets for GSM1539542
Status Public on Aug 05, 2015
Title 7196843052_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Irish
age: 72
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00111
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.089970054
ILMN_1806310 6.060405219
ILMN_1653355 6.034471592
ILMN_1705025 6.044136544
ILMN_1814316 6.052919497
ILMN_3241953 6.159212642
ILMN_1735045 6.024997455
ILMN_1680754 6.025354542
ILMN_1659452 6.104506288
ILMN_1767388 6.084035263
ILMN_1755321 6.046747268
ILMN_1698554 6.134213376
ILMN_1814092 6.139509252
ILMN_2061446 6.977154222
ILMN_1676336 6.263969669
ILMN_1752884 6.074435902
ILMN_1668851 6.020976547
ILMN_1726986 6.019073992
ILMN_3237396 6.585880792
ILMN_1688755 7.581267206

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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