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Sample GSM1539539 Query DataSets for GSM1539539
Status Public on Aug 05, 2015
Title 7196843053_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 71
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGADC054
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.173437932
ILMN_1806310 6.089881938
ILMN_1653355 6.026243641
ILMN_1705025 6.105476508
ILMN_1814316 6.028800818
ILMN_3241953 6.142168953
ILMN_1735045 6.042616661
ILMN_1680754 6.127095039
ILMN_1659452 6.084789931
ILMN_1767388 6.080218245
ILMN_1755321 6.137823326
ILMN_1698554 6.190486102
ILMN_1814092 6.231450396
ILMN_2061446 7.114238417
ILMN_1676336 6.271941413
ILMN_1752884 6.038555328
ILMN_1668851 6.031195418
ILMN_1726986 6.045746817
ILMN_3237396 6.742924798
ILMN_1688755 7.607741255

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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