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Sample GSM1539535 Query DataSets for GSM1539535
Status Public on Aug 05, 2015
Title 7943280008_E
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: British_English
age: 66
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00037
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.122165411
ILMN_1806310 6.032199867
ILMN_1653355 5.996711087
ILMN_1705025 6.098757855
ILMN_1814316 6.028794731
ILMN_3241953 6.335033375
ILMN_1735045 5.995271676
ILMN_1680754 6.137722737
ILMN_1659452 6.091144931
ILMN_1767388 6.045085465
ILMN_1755321 6.136711169
ILMN_1698554 6.166581319
ILMN_1814092 6.099133577
ILMN_2061446 6.791409763
ILMN_1676336 6.187181547
ILMN_1752884 6.035997131
ILMN_1668851 6.048898036
ILMN_1726986 6.053496736
ILMN_3237396 6.881111142
ILMN_1688755 7.587729914

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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