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Sample GSM1539528 Query DataSets for GSM1539528
Status Public on Aug 05, 2015
Title 7196843065_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 73
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSADC043
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.105870745
ILMN_1806310 6.040359692
ILMN_1653355 6.041035088
ILMN_1705025 6.036010571
ILMN_1814316 6.012377294
ILMN_3241953 6.104007661
ILMN_1735045 6.034338327
ILMN_1680754 6.079516714
ILMN_1659452 6.084655889
ILMN_1767388 6.120389018
ILMN_1755321 6.071277982
ILMN_1698554 6.118541057
ILMN_1814092 6.243967559
ILMN_2061446 6.967474224
ILMN_1676336 6.210206988
ILMN_1752884 6.045322179
ILMN_1668851 6.008482235
ILMN_1726986 6.02528055
ILMN_3237396 6.585931951
ILMN_1688755 7.657218855

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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