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Sample GSM1539517 Query DataSets for GSM1539517
Status Public on Aug 05, 2015
Title 7196843081_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 67
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOADC043
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.081000573
ILMN_1806310 6.051037629
ILMN_1653355 6.050680523
ILMN_1705025 6.031462477
ILMN_1814316 6.024922118
ILMN_3241953 6.20685661
ILMN_1735045 6.026413294
ILMN_1680754 6.126312062
ILMN_1659452 6.057852571
ILMN_1767388 6.085367534
ILMN_1755321 6.135354901
ILMN_1698554 6.096442542
ILMN_1814092 6.062634204
ILMN_2061446 6.8706803
ILMN_1676336 6.237390394
ILMN_1752884 6.020107526
ILMN_1668851 6.033407438
ILMN_1726986 6.055951694
ILMN_3237396 6.49939688
ILMN_1688755 7.876300812

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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