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Sample GSM1539512 Query DataSets for GSM1539512
Status Public on Aug 05, 2015
Title 7196843036_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: British_Scottish
age: 60
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00020
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.109911838
ILMN_1806310 6.029609803
ILMN_1653355 6.049096839
ILMN_1705025 6.02818432
ILMN_1814316 6.022332513
ILMN_3241953 6.392743166
ILMN_1735045 5.992992318
ILMN_1680754 6.140568187
ILMN_1659452 6.097647833
ILMN_1767388 6.013123896
ILMN_1755321 6.075045325
ILMN_1698554 6.142505414
ILMN_1814092 6.148469517
ILMN_2061446 6.882785022
ILMN_1676336 6.238328178
ILMN_1752884 6.04890465
ILMN_1668851 6.040237024
ILMN_1726986 6.02919577
ILMN_3237396 6.706077463
ILMN_1688755 7.855246443

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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