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Sample GSM1539491 Query DataSets for GSM1539491
Status Public on Aug 05, 2015
Title 7196843053_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 70
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGCTL002
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.110443352
ILMN_1806310 6.017379418
ILMN_1653355 6.044648417
ILMN_1705025 6.047825987
ILMN_1814316 6.057358836
ILMN_3241953 6.069800777
ILMN_1735045 6.018198799
ILMN_1680754 6.020378833
ILMN_1659452 6.154461253
ILMN_1767388 6.051380935
ILMN_1755321 6.053833642
ILMN_1698554 6.080556073
ILMN_1814092 6.263348459
ILMN_2061446 7.182158509
ILMN_1676336 6.41145116
ILMN_1752884 6.072861066
ILMN_1668851 6.014272694
ILMN_1726986 6.023874142
ILMN_3237396 6.9459853
ILMN_1688755 7.842661572

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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