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Sample GSM1539476 Query DataSets for GSM1539476
Status Public on Aug 05, 2015
Title 7196843073_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Other Caucasian
age: 74
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSCTL002
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.264753469
ILMN_1806310 6.048236776
ILMN_1653355 6.027286557
ILMN_1705025 6.026621002
ILMN_1814316 6.040933361
ILMN_3241953 6.207471462
ILMN_1735045 6.03889846
ILMN_1680754 6.207629562
ILMN_1659452 6.027743704
ILMN_1767388 6.067533343
ILMN_1755321 6.069318886
ILMN_1698554 6.23872007
ILMN_1814092 6.208362514
ILMN_2061446 7.280513759
ILMN_1676336 6.294235263
ILMN_1752884 6.029524699
ILMN_1668851 6.01430111
ILMN_1726986 6.064822439
ILMN_3237396 6.701955679
ILMN_1688755 7.806099057

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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