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Sample GSM1539473 Query DataSets for GSM1539473
Status Public on Aug 05, 2015
Title 7196843090_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 73
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOCTL040
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.05265933
ILMN_1806310 6.100390788
ILMN_1653355 6.083031286
ILMN_1705025 6.080588286
ILMN_1814316 5.990754016
ILMN_3241953 6.22676657
ILMN_1735045 6.039376937
ILMN_1680754 6.120395134
ILMN_1659452 6.131153902
ILMN_1767388 6.079112358
ILMN_1755321 6.021441396
ILMN_1698554 6.316649462
ILMN_1814092 6.055546588
ILMN_2061446 7.255095086
ILMN_1676336 6.080584527
ILMN_1752884 6.112999651
ILMN_1668851 6.036908893
ILMN_1726986 6.156198414
ILMN_3237396 6.519932544
ILMN_1688755 7.803959715

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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