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Sample GSM1539453 Query DataSets for GSM1539453
Status Public on Aug 05, 2015
Title 7348931013_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Any_Other_White_Background
age: 69
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00009
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.021554996
ILMN_1806310 6.120947727
ILMN_1653355 6.07705316
ILMN_1705025 6.046493917
ILMN_1814316 6.062286401
ILMN_3241953 6.066786773
ILMN_1735045 6.019022381
ILMN_1680754 5.987067615
ILMN_1659452 6.106077305
ILMN_1767388 6.132219082
ILMN_1755321 6.138276798
ILMN_1698554 6.062623564
ILMN_1814092 6.074686825
ILMN_2061446 7.215817451
ILMN_1676336 6.197586083
ILMN_1752884 6.036584138
ILMN_1668851 6.023424263
ILMN_1726986 6.076772343
ILMN_3237396 6.520998268
ILMN_1688755 7.735476108

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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