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Sample GSM1539450 Query DataSets for GSM1539450
Status Public on Aug 05, 2015
Title 7943280031_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Other Caucasian
age: 68
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSCTL017
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.130290888
ILMN_1806310 6.115336111
ILMN_1653355 6.038901565
ILMN_1705025 5.993015664
ILMN_1814316 6.005352584
ILMN_3241953 6.283049023
ILMN_1735045 6.011207206
ILMN_1680754 6.107112513
ILMN_1659452 6.112898128
ILMN_1767388 6.049644479
ILMN_1755321 6.067019713
ILMN_1698554 6.115598367
ILMN_1814092 6.157249853
ILMN_2061446 7.101155401
ILMN_1676336 6.253595792
ILMN_1752884 6.025836314
ILMN_1668851 6.084229429
ILMN_1726986 6.030707275
ILMN_3237396 7.005908426
ILMN_1688755 7.770510466

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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