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Sample GSM1539424 Query DataSets for GSM1539424
Status Public on Aug 05, 2015
Title 7348931013_E
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Caribbean
age: 71
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description DCR00323
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.239513649
ILMN_1806310 6.081181022
ILMN_1653355 6.13701701
ILMN_1705025 6.067252816
ILMN_1814316 6.094265417
ILMN_3241953 6.144420888
ILMN_1735045 6.163852076
ILMN_1680754 6.148172721
ILMN_1659452 6.075384525
ILMN_1767388 6.110473912
ILMN_1755321 6.082076798
ILMN_1698554 6.193252278
ILMN_1814092 6.10001123
ILMN_2061446 7.051040336
ILMN_1676336 6.188811356
ILMN_1752884 6.009690437
ILMN_1668851 6.050509923
ILMN_1726986 6.048022712
ILMN_3237396 6.697930002
ILMN_1688755 7.416474296

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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