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Sample GSM1539423 Query DataSets for GSM1539423
Status Public on Aug 05, 2015
Title 7196843063_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 71
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSMCI049
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.113906127
ILMN_1806310 6.014992307
ILMN_1653355 6.117177785
ILMN_1705025 6.066573588
ILMN_1814316 6.082016921
ILMN_3241953 6.110112531
ILMN_1735045 6.031975598
ILMN_1680754 6.087284839
ILMN_1659452 6.075786457
ILMN_1767388 6.073344904
ILMN_1755321 6.062837378
ILMN_1698554 6.185041867
ILMN_1814092 6.186066515
ILMN_2061446 7.154083568
ILMN_1676336 6.409389226
ILMN_1752884 6.061226178
ILMN_1668851 6.038472809
ILMN_1726986 6.01938288
ILMN_3237396 6.540289732
ILMN_1688755 7.714385932

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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