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Sample GSM1539421 Query DataSets for GSM1539421
Status Public on Aug 05, 2015
Title 7196843007_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 71
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZMCI006
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.362924211
ILMN_1806310 6.035560318
ILMN_1653355 6.086647893
ILMN_1705025 6.062911228
ILMN_1814316 6.044694349
ILMN_3241953 6.169056938
ILMN_1735045 6.038568039
ILMN_1680754 6.170167334
ILMN_1659452 6.247085985
ILMN_1767388 6.075366994
ILMN_1755321 6.046715013
ILMN_1698554 6.177718586
ILMN_1814092 6.165150955
ILMN_2061446 7.240474693
ILMN_1676336 6.316433925
ILMN_1752884 5.998022012
ILMN_1668851 6.038257109
ILMN_1726986 6.040578062
ILMN_3237396 6.804997687
ILMN_1688755 7.689488468

Total number of rows: 32049

Table truncated, full table size 779 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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