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Sample GSM1539419 Query DataSets for GSM1539419
Status Public on Aug 05, 2015
Title 7196843054_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 70
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZMCI022
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.239722451
ILMN_1806310 6.060049739
ILMN_1653355 6.062008381
ILMN_1705025 6.126886399
ILMN_1814316 6.081725149
ILMN_3241953 6.045382935
ILMN_1735045 6.010684858
ILMN_1680754 6.228769757
ILMN_1659452 6.053858446
ILMN_1767388 6.048621156
ILMN_1755321 6.125395086
ILMN_1698554 6.175307696
ILMN_1814092 6.328492471
ILMN_2061446 7.220151186
ILMN_1676336 6.012564316
ILMN_1752884 6.018446923
ILMN_1668851 6.022211466
ILMN_1726986 6.084580669
ILMN_3237396 6.67230002
ILMN_1688755 8.110519043

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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