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Sample GSM1539416 Query DataSets for GSM1539416
Status Public on Aug 05, 2015
Title 7943280031_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Any_Other_White_Background
age: 68
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZMCI023
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.083525538
ILMN_1806310 6.086186575
ILMN_1653355 6.063968831
ILMN_1705025 6.046691206
ILMN_1814316 6.056362539
ILMN_3241953 6.127498931
ILMN_1735045 6.142264883
ILMN_1680754 6.140749403
ILMN_1659452 6.067492731
ILMN_1767388 6.086294916
ILMN_1755321 6.035781987
ILMN_1698554 6.141798097
ILMN_1814092 6.094220037
ILMN_2061446 7.20194863
ILMN_1676336 6.180262328
ILMN_1752884 6.034519313
ILMN_1668851 6.026180756
ILMN_1726986 6.039649766
ILMN_3237396 6.649200102
ILMN_1688755 7.926928113

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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