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Sample GSM1539415 Query DataSets for GSM1539415
Status Public on Aug 05, 2015
Title 7943280031_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 68
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGMCI034
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.077189807
ILMN_1806310 6.019253344
ILMN_1653355 6.072448564
ILMN_1705025 6.062969544
ILMN_1814316 6.068175052
ILMN_3241953 6.289073856
ILMN_1735045 6.023233619
ILMN_1680754 6.071653813
ILMN_1659452 6.068349053
ILMN_1767388 6.04374717
ILMN_1755321 6.213724812
ILMN_1698554 6.222129923
ILMN_1814092 6.195197129
ILMN_2061446 7.111719536
ILMN_1676336 6.20563135
ILMN_1752884 6.010632557
ILMN_1668851 6.022468653
ILMN_1726986 6.032492844
ILMN_3237396 6.463982333
ILMN_1688755 7.833795274

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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