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Sample GSM1539412 Query DataSets for GSM1539412
Status Public on Aug 05, 2015
Title 7196843063_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 65
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZMCI020
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL10558
Series (2)
GSE63061 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort (batch 2)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 6.364765088
ILMN_1806310 6.041591825
ILMN_1653355 6.168537668
ILMN_1705025 6.039097397
ILMN_1814316 5.992092807
ILMN_3241953 6.093678712
ILMN_1735045 6.045521805
ILMN_1680754 6.046596969
ILMN_1659452 6.207120625
ILMN_1767388 6.061434848
ILMN_1755321 6.098209552
ILMN_1698554 6.199917318
ILMN_1814092 6.428845685
ILMN_2061446 7.129728546
ILMN_1676336 6.169737635
ILMN_1752884 6.062429995
ILMN_1668851 6.004324527
ILMN_1726986 6.062886025
ILMN_3237396 6.470610907
ILMN_1688755 7.854653503

Total number of rows: 32049

Table truncated, full table size 778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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