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Sample GSM1539392 Query DataSets for GSM1539392
Status Public on Aug 05, 2015
Title 4856076022_K
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 74
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0008
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.652356752
ILMN_2383229 7.466336252
ILMN_1806310 7.404636168
ILMN_1779670 7.515540042
ILMN_2321282 7.480191939
ILMN_1671474 7.402851176
ILMN_1772582 7.395628317
ILMN_1653355 7.812286934
ILMN_1717783 7.45494427
ILMN_1705025 7.486972814
ILMN_2359168 7.361099123
ILMN_1731507 7.401027571
ILMN_1787689 7.595953028
ILMN_1745607 7.440871985
ILMN_1668111 7.423553045
ILMN_1735045 7.40794804
ILMN_1680754 7.488466936
ILMN_1659452 7.469865957
ILMN_1767388 7.465273459
ILMN_1755321 7.543210799

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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