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Sample GSM1539362 Query DataSets for GSM1539362
Status Public on Aug 05, 2015
Title 4856076028_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 81
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSC0714
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.518584323
ILMN_2383229 7.447937685
ILMN_1806310 7.465846757
ILMN_1779670 7.614699052
ILMN_2321282 7.577267313
ILMN_1671474 7.420860217
ILMN_1772582 7.491564236
ILMN_1653355 7.543700477
ILMN_1717783 7.447566944
ILMN_1705025 7.446965995
ILMN_2359168 7.502302511
ILMN_1731507 7.456367385
ILMN_1787689 7.625178246
ILMN_1745607 7.40617538
ILMN_1668111 7.461199193
ILMN_1735045 7.38056785
ILMN_1680754 7.555130478
ILMN_1659452 7.362733406
ILMN_1767388 7.520992458
ILMN_1755321 7.728444923

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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