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Sample GSM1539359 Query DataSets for GSM1539359
Status Public on Aug 05, 2015
Title 4856076026_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 76
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGC0044
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.626648557
ILMN_2383229 7.376136203
ILMN_1806310 7.41888969
ILMN_1779670 7.414481902
ILMN_2321282 7.394500674
ILMN_1671474 7.399033036
ILMN_1772582 7.426464235
ILMN_1653355 7.670185533
ILMN_1717783 7.402251176
ILMN_1705025 7.350351754
ILMN_2359168 7.535807457
ILMN_1731507 7.433163574
ILMN_1787689 7.585742377
ILMN_1745607 7.493201462
ILMN_1668111 7.434120847
ILMN_1735045 7.368933613
ILMN_1680754 7.625903727
ILMN_1659452 7.467990478
ILMN_1767388 7.463151514
ILMN_1755321 7.714945058

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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