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Sample GSM1539358 Query DataSets for GSM1539358
Status Public on Aug 05, 2015
Title 4856076026_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 84
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSC0716
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.519746582
ILMN_2383229 7.488005728
ILMN_1806310 7.570936751
ILMN_1779670 7.468897414
ILMN_2321282 7.469246595
ILMN_1671474 7.517419723
ILMN_1772582 7.462712775
ILMN_1653355 7.61267815
ILMN_1717783 7.384137752
ILMN_1705025 7.430046818
ILMN_2359168 7.540377889
ILMN_1731507 7.37635007
ILMN_1787689 7.503656155
ILMN_1745607 7.519471572
ILMN_1668111 7.465314843
ILMN_1735045 7.400594165
ILMN_1680754 7.616062632
ILMN_1659452 7.379773741
ILMN_1767388 7.435217483
ILMN_1755321 7.65719056

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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